Sheet1
Sheet2
Sheet3
Sheet 1: Sheet1
Kodutöö biotehnoloogiasSheet 2: Sheet2
v1 v2 v3 v4 v5 b1 b2 b3 b4
A -1 0 0 0 0 1 0 0 0
B 2 -2 0 0 0 0 0 0 0
C 0 2 -2 1 0 0 -1 0 0
D 0 0 1 0 1 0 0 -1 0
E 0 0 0 0 1 0 0 0 0
F 0 0 0 -2 -2 0 0 0 1
Mõõdetud
b1 25
b2 6
b4 5
STÖHHIOMEETRILINE MAATRIKS A MÕÕDETUD VOOGUDE STÖHHIOMEETRILINE MAATRIKS v1 v2 v3 v4 v5 b3
b1 b2 b4 A -1 0 0 0 0 0
A 1 0 0
B 2 -2 0 0 0 0
B 0 0 0
C 0 2 -2 1 0 0
C 0 -1 0
D 0 0 1 0 1 -1
D 0 0 0
E 0 0 0 0 1 0
E 0 0 0
F 0 0 0 -2 -2 0
F 0 0 1
PÖÖRDMAATRIKS TASAKAALUVEKTOR b TUNDMATUD VOOD v1 v2 v3 v4 v5 b3
-25
25
A -1 0 0 0 0 0
0
25
B -1 -0.5 0 0 0 0
6
23.25
C -1 -0.5 -0.5 0 -0.5 -0.25
0
2.5
D 0 0 0 0 -1 -0.5
0
0
E 0 0 0 0 1 0
-5
23.25
F -1 -0.5 -0.5 -1 0.5 -0.25
Sheet 3: Sheet3
V1 V2 V3 V4 V5 V6 V7 V8 V9 V10 V11 V12 V13 V14 V15 V16 V17 V18 V19 V20 V21 V22 V23 V24 V25 V26 V27 V28 V29 V30 O1 O2 O3 O4 O5 O6 O7 O8 O9 O10 O11
1 G6P 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0
2 F6P 0 1 -1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -1 0 0 0 0 0 0 0 0 0
3 FBP 0 0 1 -1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
4 GAP 0 0 0 0 1 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 -1 0 0 0 0 0 0
5 Dihydroxyacetone-P 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
6 GBP 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
7 3PG 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0
8 PEP 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0
9 PYR 0 0 0 0 0 0 0 0 0 1 -1 0 -1 0 0 -1 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0
10
Lactate 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
11 Ace-CoA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0
12 Acetyl-P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
13 Acetate 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
14 Acetaldehyde 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
15 Ethanol 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
16 Formate 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
17 OXA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0
18 2KG 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1
19 Gluc-1,5-lactone-6P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
20 6P-Gluconate 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
21 Ru-5P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
22 R5P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -1 0 0 0 -1 0 0 0 0 0 0 0 0
23 X5P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0
24 S7P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0
25 E4P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 -1 0 0 0 0 0 0 0
V1 V2 V3 V5 V7 V8 V9 V10 V12 V13 V14 V15 V16 V17 V18 V19 V22 V23 V24 V25 V26 V27 V28 V29 V30
V4 V6 V11 V20 V21 O1 O2 O3 O4 O5 O6 O7 O8 O9 O10 O11
1 G6P 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0
0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0
2 F6P 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
1 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0
3 FBP 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
-1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
4 GAP 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1
0 1 0 0 0 0 0 0 0 -1 0 0 0 0 0 0
5 Dihydroxyacetone-P 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
6 GBP 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
7 3PG 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0
8 PEP 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 -1 0 0 0 0
9 PYR 0 0 0 0 0 0 0 1 0 -1 0 0 -1 0 0 0 -1 0 0 0 0 0 0 0 0
0 0 -1 0 0 0 0 0 0 0 0 0 -1 0 0 0
10 Lactate 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
11 Ace-CoA 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 -1 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0 0
12 Acetyl-P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
13 Acetate 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0
14 Acetaldehyde 0 0 0 0 0 0 0 0 0 1 -1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
15 Ethanol 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
16 Formate 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0
17 OXA 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1 0
18 2KG 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1
19 Gluc-1,5-lactone-6P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
20 6P-Gluconate 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
21 Ru-5P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 -1 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
22 R5P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -1 0
0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0
23 X5P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
24 S7P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 -1
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
25 E4P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0
Inverse 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 2 1
0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -1
0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 -1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 0 0 -1 1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 0 0 -1 1 -1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 0 0 -1 1 -1 -1 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 0 0 0 0 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 -1 1 -1 -1 -1 -1 0 0 0 0 0 0 -1 -1 -1 0 0 0 0 0 1 0
0 0 0 -1 1 -1 -1 -1 -1 0 -1 -1 -1 -1 0 0 -1 -1 0 0 0 0 0 1 0
0 0 0 -1 1 -1 -1 -1 -1 0 -1 -1 -1 -1 -1 0 -1 -1 0 0 0 0 0 1 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 -1 -1 -1 0 0 1 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 2 2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 2 2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 2 2
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
v0)kuidas muutub LDH (v11) over-expression mutandis etanooli
tootlikkus Known fluxes Balance Calculated fluxes võrreldes
wild -type tüvega, kui laktaadi tootmine (v12) kasvab 2x, kuid ülejäänud mõõdetud vood jäävad samaks?
V4 10
-80
V1 450
V12 50
-60
V2 10
Known fluxes Balance Calculated fluxes Etanooli tootlikkus wild-
types 0.3043478261
V7 750
-10
V3 60
V4 10
-80
V1 500
Etanooli tootlikkus mutandis
0.2739130435
V20 50
-50
V5 50
V12 100
-60
V2 60
V21 35
-50
V6 0
V7 750
-10
V3 110
O1 80
0
V15 0
V20 50
0
V5 100
O2 70
-130
V8 -130
V21 35
-100
V6 100
M(ethanole)=46g/mol
O3 140
-160
V9 -290
O1 80
0
V15 100
O4 110
-790
V10 750
O2 70
-130
V8 -30
O5 100
750
V11 -
1230 O3 140
-160
V9 -190
Yps=(V16/M)/(V1/M)
O6 130
-60
V13 -
1305 O4 110
-790
V10 750
O7 160
0
V14 -1305
O5 100
750
V11 -
1130 O8 40
-50
V16 35
O6 130
-60
V13 -
1205 O9 60
0
V17 -75
O7 160
0
V14 -1205
O10 20
0
V18 50
O8 40
-50
V16 35
O11 95
-35
V19 50
O9 60
0
V17 -75
-20
V22 115
O10 20
0
V18 50
-95
V23 95
O11 95
-35
V19 50
0
V24 360
-20
V22 115
0
V25 360
-95
V23 95
0
V26 360
0
V24 360
-140
V27 250
0
V25 360
0
V28 110
0
V26 360
0
V29 110
-140
V27 250
-110
V30 110
0
V28 110
0
V29 110
-110
V30 110
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