Effective length of database: 2133837566 Effective search space: 21338375660 Effective search space used: 21338375660 T: 11 A: 40 X1: 15 (7.4 bits) X2: 35 (14.8 bits) X3: 58 (24.6 bits) S1: 32 (16.8 bits) S2: 32 (16.8 bits) b. Uurida leitud sarnaseid järjestusi. Millised valgutüübid on esindatud, millised funktsioonid. Kas saab oletada midagi antud motiivi funktsiooni kohta valkudes või on tegemist juhuslikku kokkulangevusega. Valgutüübid: enolase 1, alpha non-neuron [Mus musculus]E=3e-05, Score=49.4 võib oletada, et antud valgu järjestus omab antud organismi jaoks ka bioloogilist funktsiooni, kuna e väärtus on piisavalt väike ning kokkulangevus ei olnud juhuslik. Järgnevad kaks tulemust arvatavasti ei oma antud organismide jaoks bioloogilist funktsiooni, kuna e-väärtused on juba liiga suured ning kokkulangevus oli juhuslik. phosphopyruvate hydratase E=3.6 Score=32.5 2-phospho-D-glycerate hydrolase [Nereis macrydi] E=6
CEA (carcinoembryonic antigen)[2], CD133, CD24, CD29, CD44, CD166, EpCAM (epithelial cell Soolevähk adhesion molecule), ALDH1A1, ALDH1B1, Lgr5 (leucine-rich-repeat-containing G-protein- coupled receptor 5)[13] KRAS, EGFR (Epidermal Growth Factor Receptor), ALK (Anaplastic Lymphoma Kinase)[14], CEA Kopsuvähk (carcino emryonic antigen), NSE (neuron-specific enolase), CA-125[5] Eesnäärmevähk PSA (Prostate specific antigen)[11], PCA 3 (Prostate cancer antigen 3), ERG [15] Kõhunäärmevähk CA 19-9 (cancer antigen 19-9)[11], CD1D [16], PEAK1 [17] AFP (Alpha-fetoprotein)[8], AFLP[5], GPC3 (Glypican-3), DCP (Des-Gamma-Carboxy Prothrombin), Maksavähk GGT (gamma-glutamyl transferase), TGF-Beta (Transforming Growth Factor-Beta) [18] Melanoom S100B, TA90IC, YKL-40 [19]
change with postmortem storage include mortem correlate to shear force measure- actin, myosin heavy chain, titin, myosin ments at 1 and 4 days postmortem in porcine light chain I, myosin light chain II, CapZ, longissimus muscle (Lametsch et al. 2003). cofilin, troponin-T, cypher proteins, and Similarly, spots corresponding to actin, myo- myozenin. Sarcoplasmic proteins enolase, kinase, F-actin capping protein, HSP27, phosphoglycerate kinase, pyruvate dehydro- myosin light chain I, peroxiredoxin 2, trios- genase, glycogen phosphorylase, triosephos- ephosphate isomerase, and troponin T were phate isomerase, myokinase, eukaryotic correlated to shear force changes between 1 translation initiation factor 5A, α-crystallin, and 7 days postmortem in porcine longissi- creatine kinase, and pyruvate kinase were mus muscle (Hwang et al
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